PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g014060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HB-other
Protein Properties Length: 366aa    MW: 40565.9 Da    PI: 4.4564
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g014060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.6e-09303350653
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     + +k  +e+Le+++++++ p+ +    + + ++L+ ++V  WF  rRa
  Csa13g014060.1 303 RVKKAHIETLEKVYRRSKRPTNAVVSSIVQVTNLPRKRVLKWFEDRRA 350
                     567899*****************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.993295355IPR001356Homeobox domain
SuperFamilySSF466892.01E-8300355IPR009057Homeodomain-like
SMARTSM003894.0E-4301359IPR001356Homeobox domain
PfamPF000461.6E-6303351IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-8303361IPR009057Homeodomain-like
CDDcd000865.39E-6306350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MIKAMAVALS SSSGVVSHLL PPSFSSSSGV SVNRVLFRNR KSSPCSLALP FHSPSPRSVL  60
VFARGKNRKG FASSSSPSPK KNKKKSFERD DNGGSEEEDD PFEALFNLLE EDLKNDNSSI  120
DDEEISEEEL NALADELARV LGGGDDDDDG IDLFGSATAD VVDDKDEDED DNIDDDDDED  180
ENDDDSEEED ERPTKLKNWQ LRRLAYALKA GRRKTSIKNL AAEVCLDRAY VLELLRDPPP  240
KLLMLSATLP DEKPPVAAPE NSSPDPTPEE SSPAEEDVVV EPVEKVKDEA VHVMQQRWSA  300
QKRVKKAHIE TLEKVYRRSK RPTNAVVSSI VQVTNLPRKR VLKWFEDRRA EDGVPDKRAP  360
YQAPV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0020170.0BT002017.1 Arabidopsis thaliana putative protein (At5g11270) mRNA, complete cds.
GenBankBT0087430.0BT008743.1 Arabidopsis thaliana At5g11270 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453172.10.0PREDICTED: protein BFR2-like
SwissprotQ8H0V51e-161OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLD7M3N91e-173D7M3N9_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.6__1093__AT5G11270.11e-172(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.12e-88overexpressor of cationic peroxidase 3